Vignette Report

Author

Simon Bond

Published

January 12, 2026

Baseline

1.1.1 Summary Table

Note A [Population-full]
Variable	Statistics	Control	Drug	Total
aGe (yAars)	n	3	1	4
	Mean (SD)	33.3 (11.7)	56.0 ( NA)	39.0 (14.8)
	Median	38	56	40
	Min, Max	20, 42	56, 56	20, 56

gender	Male	1/3 (33%)	1/1 (100%)	2/4 (50%)
	Female	2/3 (67%)	0/1 (0%)	2/4 (50%)

fictitious data

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/analysis.R

1.1 Summary Table

Note A [Population-safety]
Variable	Statistics	Control	Drug	Total
Age	n	3	3	6
	Mean (SD)	33.3 (11.7)	43.3 (21.1)	38.3 (16.2)
	Median	38	55	40
	Min, Max	20, 42	19, 56	19, 56

Gender	Male	1/3 (33%)	2/3 (67%)	3/6 (50%)
	Female	2/3 (67%)	1/3 (33%)	3/6 (50%)

fictitious data

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/analysis.R

1.2 Regression: Age predicted by Treatment

Note A [Population-safety]
Parameter	Estimate (SE)	Conf. Int.	p-value
Mean age reference arm	33.3 (9.85)	6.00, 60.7	0.0276
Treament Effect	10.0 (13.9)	-28.7, 48.7	0.5124

Residual SE	17.1
Number of Observations	6

fictitious data

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/analysis.R

1.3 Kaplan-Meier Plot

Note A [Population-safety]

fictitious data

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/analysis.R

::: {.landscape}

1.10 Summary Figure

Note B [Population-safety]

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/analysis.R

:::

Safety

2 Deaths

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/analysis.R

::: {.landscape}

Meta

9 Imported Data

NA [Population-NA]
name	file	folder	mod_time	full_file_path
data	dirtydata.csv	/usr/local/lib/R/site-library/cctu/extdata	2025-11-18 09:26:59	/usr/local/lib/R/site-library/cctu/extdata/dirtydata.csv
codes	codes.csv	/usr/local/lib/R/site-library/cctu/extdata	2025-11-18 09:26:59	/usr/local/lib/R/site-library/cctu/extdata/codes.csv

Program: /home/rstudio/Documents/GitHub/cctu/vignettes/Progs/data_import.R

:::

Session information

R version 4.5.1 (2025-06-13)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/London
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] tinytable_0.15.0 xml2_1.4.1      

loaded via a namespace (and not attached):
 [1] digest_0.6.37     fastmap_1.2.0     xfun_0.53         knitr_1.50       
 [5] htmltools_0.5.8.1 png_0.1-8         rmarkdown_2.30    cli_3.6.5        
 [9] litedown_0.7      compiler_4.5.1    rstudioapi_0.17.1 tools_4.5.1      
[13] evaluate_1.0.5    yaml_2.3.10       rlang_1.1.6       jsonlite_2.0.0   
[17] htmlwidgets_1.6.4